Mercurial > repos > yufei-luo > s_mart

view SMART/galaxy/ConvertTranscriptFile_BlastToSam.xml @ 6:769e306b7933

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Change the repository level.
author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
parents
children
line wrap: on
line source

<tool id="ConvertTranscriptFile_BlastToSam" name="Blast (-m 8) -> Sam">
  <description>Convert Blast (-m 8) File to Sam File.</description>
  <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f blast -o $outputFile -g sam yes 2>$logFile </command>
  <inputs>
    <param name="inputFile" type="data" label="Input File" format="tabular"/>
  </inputs>

  <outputs>
    <data format="sam" name="outputFile" label="[blast -> sam] Output File"/>
    <data format="txt" name="logFile" label="[blast -> sam] Log File"/>
  </outputs>

  <help>
  </help>
</tool>