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view SMART/galaxy/CountReadGCPercent.xml @ 6:769e306b7933

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author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
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<tool id="CountReadGCPercent" name="count read GCpercent">
    <description>Count GC percent for each read against a genome.</description>
    <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
  <inputs>
      <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
      <param name="inputGffFile" type="data" label="Input File" format="gff3"/>
  </inputs>

  <outputs>
    <data format="gff3" name="outputFile" label="[CountReadGCPercent] Output File"/>
   </outputs>

  <help>
  </help>
</tool>