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view SMART/galaxy/getWigDistance.xml @ 6:769e306b7933

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author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
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<tool id="getWigDistance" name="get wig distance">
    <description>Compute the average data around some genomic coordinates using WIG files (thus covering a large proportion of the genome).</description>
    <command interpreter="python">
		../Java/Python/getWigDistance.py -i $inputGff3File -f gff3 -w $inputWigFile -a 0.0 -d $distance $strand -o $outputFile
	</command>
	
    <inputs>
    	<param name="inputGff3File" type="data" label="Input Gff3 File (compulsory option)" format="gff3"/>
   		<param name="inputWigFile" type="data" label="Input Wig File (compulsory option)" format="wig"/>
		<param name="distance" type="integer" value="1000" label="distance option (compulsory option)" help="Distance around position.Be Careful! The value must be upper than 0"/>
		<param name="strand" type="boolean" truevalue="-s" falsevalue="" checked="false" label="consider both strands separately."/>    
    </inputs>
        
    <outputs>
       	<data name="outputFile" format="png" label="[getWigDistance] PNG output File"/>    
    </outputs> 
</tool>