Mercurial > repos > yufei-luo > s_mart
view tool_conf.xml @ 62:8c42a6d7ffd4
Added simple test BED file.
author | m-zytnicki |
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date | Mon, 19 Oct 2015 11:25:11 +0200 |
parents | b6481845eb0d |
children |
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<section id="s_mart" name="S-MART" version="3.0"> <label id="Smart_Comparison" text="Comparison Tools"/> <tool file="s_mart/CompareOverlappingAdapt.xml"/> <tool file="s_mart/getDifference.xml"/> <tool file="s_mart/computeCoverage.xml"/> <tool file="s_mart/GetFlanking.xml"/> <tool file="s_mart/GetDifferentialExpression.xml"/> <label id="Smart_Merge" text="Merge Tools"/> <tool file="s_mart/clusterize.xml"/> <tool file="s_mart/mergeTranscriptLists.xml"/> <tool file="s_mart/CollapseReads.xml"/> <tool file="s_mart/clusterizeBySlidingWindows.xml"/> <tool file="s_mart/mergeSlidingWindowsClusters.xml"/> <label id="Smart_Visualization" text="Visualization Tools"/> <tool file="s_mart/getDistribution.xml"/> <tool file="s_mart/getDistance.xml"/> <tool file="s_mart/getSizes.xml"/> <tool file="s_mart/plotCoverage.xml"/> <tool file="s_mart/WrappGetLetterDistribution1.xml"/> <tool file="s_mart/plotTranscriptList.xml"/> <label id="Smart_Sequence" text="Sequence Tools"/> <tool file="s_mart/CountReadGCPercent.xml"/> <label id="Smart_Modification" text="Modification Tools"/> <tool file="s_mart/modifyGenomicCoordinates.xml"/> <tool file="s_mart/modifySequenceList.xml"/> <tool file="s_mart/trimSequences.xml"/> <label id="Smart_Selection" text="Selection Tools"/> <tool file="s_mart/getExons.xml"/> <tool file="s_mart/getIntrons.xml"/> <tool file="s_mart/restrictFromSize.xml"/> <tool file="s_mart/restrictTranscriptList.xml"/> <label id="Smart_Conversion" text="Conversion Tools"/> <tool file="s_mart/ConvertTranscriptFile.xml"/> <tool file="s_mart/coordinatesToSequence.xml"/> <tool file="s_mart/mapperAnalyzer.xml"/> <label id="Smart_WIG" text="WIG Manipulation Tools"/> <tool file="s_mart/getWigData.xml"/> <tool file="s_mart/getWigDistance.xml"/> <tool file="s_mart/getWigProfile.xml"/> <label id="Smart_GFF" text="GFF Manipulation Tools"/> <tool file="s_mart/CleanTranscriptFile.xml"/> <tool file="s_mart/changeTagName.xml"/> <tool file="s_mart/changeGffFeatures.xml"/> <tool file="s_mart/SelectByTag.xml"/> </section>