Mercurial > repos > yufei-luo > s_mart

view SMART/DiffExpAnal/countNumber.xml @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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<tool id="countNumber" name="countNumber">
	<description>Calculate the number of reads(annotations) overlapping for each transcript.</description>
	<command interpreter="perl"> countNumber.pl $input $outputCSV
	</command>

	<inputs>
		<param name="input" type="data" format="gff3" label="Please choose your gff3 format file (which contains the number of overlaps)."/>		
	</inputs>

	<outputs>
		<data format="csv" name="outputCSV" label="countNumber Output"/>
	</outputs>

	<help>
	</help>
</tool>