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view commons/core/parsing/test/data/sampleForTestVarscanToVCF.varscan @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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Chrom	Position	Ref	Cons	Reads1	Reads2	VarFreq	Strands1	Strands2	Qual1	Qual2	Pvalue	MapQual1	MapQual2	Reads1Plus	Reads1Minus	Reads2Plus	Reads2Minus	VarAllele
chr1	10759	C	Y	2	1	33.33%	1	1	65	47	0.98	1	1	0	2	0	1	T
chr1	12438	C	S	1	1	50%	1	1	62	42	0.98	1	1	0	1	0	1	G
chr1	17432	A	M	2	1	33.33%	1	1	55	37	0.98	1	1	0	2	1	0	C
chr1	20391	A	W	2	1	33.33%	1	1	56	37	0.98	1	1	2	0	1	0	T
chr1	21207	T	Y	2	1	33.33%	1	1	55	41	0.98	1	1	2	0	1	0	C
chr1	26057	T	K	11	2	15.38%	2	1	60	37	0.98	1	1	7	4	2	0	G
chr1	36838	T	Y	2	1	33.33%	1	1	61	36	0.98	1	1	2	0	0	1	C
chr1	37751	A	M	3	1	25%	1	1	65	42	0.98	1	1	0	3	0	1	C
chr1	43500	C	S	3	1	25%	2	1	65	40	0.98	1	1	2	1	0	1	G
chr1	50481	A	W	2	1	33.33%	1	1	60	40	0.98	1	1	0	2	1	0	T
chr1	106849	C	S	3	1	25%	2	1	65	40	0.98	1	1	2	1	1	0	G
chr1	108726	T	W	2	1	33.33%	1	1	50	41	0.98	1	1	0	2	0	1	A
chr1	114204	G	S	4	2	33.33%	2	2	60	39	0.98	1	1	2	2	1	1	C
chr1	115030	A	M	3	1	25%	2	1	57	41	0.98	1	1	2	1	1	0	C
chr1	116173	A	R	7	2	22.22%	2	1	58	39	0.98	1	1	5	2	2	0	G
chr1	118433	G	S	6	1	14.29%	2	1	64	50	0.98	1	1	4	2	1	0	C
chr1	119042	A	R	5	1	16.67%	2	1	55	51	0.98	1	1	2	3	1	0	G
chr1	139219	A	R	1	1	50%	1	1	65	46	0.98	1	1	1	0	0	1	G
chr1	140710	A	R	9	2	18.18%	2	1	63	41	0.98	1	1	3	6	0	2	G
chr1	144419	T	Y	3	1	25%	2	1	63	39	0.98	1	1	1	2	1	0	C
chr1	146099	G	S	2	1	33.33%	2	1	64	38	0.98	1	1	1	1	0	1	C
chr1	146435	T	Y	11	7	38.89%	2	1	60	24	0.98	1	1	4	7	7	0	C
chr1	147232	A	W	2	1	33.33%	2	1	64	39	0.98	1	1	1	1	0	1	T
chr1	158703	A	M	2	1	33.33%	2	1	60	55	0.98	1	1	1	1	1	0	C
chr1	166732	A	W	4	2	33.33%	2	2	62	24	0.98	1	1	2	2	1	1	T
chr1	179887	C	M	3	1	25%	2	1	64	39	0.98	1	1	1	2	1	0	A
chr1	185971	A	R	3	1	25%	2	1	55	40	0.98	1	1	2	1	0	1	G
chr1	211074	A	M	3	1	25%	1	1	65	40	0.98	1	1	3	0	0	1	C
chr1	219573	G	S	1	1	50%	1	1	61	41	0.98	1	1	1	0	0	1	C
chr1	229396	C	S	2	1	33.33%	2	1	57	39	0.98	1	1	1	1	0	1	G
chr1	236388	T	K	8	2	20%	2	1	52	32	0.98	1	1	2	6	0	2	G
chr1	245990	G	S	5	1	16.67%	2	1	61	46	0.98	1	1	3	2	1	0	C
chr1	249155	C	S	2	1	33.33%	2	1	62	37	0.98	1	1	1	1	1	0	G
chr1	261257	T	K	3	1	25%	1	1	60	39	0.98	1	1	0	3	0	1	G
chr1	274692	A	R	2	1	33.33%	2	1	63	39	0.98	1	1	1	1	0	1	G
chr1	283468	G	S	3	1	25%	2	1	63	45	0.98	1	1	2	1	1	0	C
chr1	284288	T	W	3	1	25%	2	1	64	39	0.98	1	1	2	1	1	0	A
chr1	286983	T	Y	2	1	33.33%	1	1	64	37	0.98	1	1	0	2	1	0	C
chr1	287378	C	M	2	1	33.33%	2	1	65	37	0.98	1	1	1	1	0	1	A
chr1	302928	A	R	1	1	50%	1	1	64	38	0.98	1	1	0	1	1	0	G
chr1	305952	C	M	2	1	33.33%	1	1	65	38	0.98	1	1	0	2	0	1	A
chr1	307932	T	Y	4	1	20%	2	1	65	42	0.98	1	1	1	3	0	1	C
chr1	317422	G	S	3	1	25%	1	1	57	40	0.98	1	1	0	3	0	1	C
chr1	321480	A	W	2	1	33.33%	1	1	64	38	0.98	1	1	2	0	0	1	T
chr1	322307	A	M	1	1	50%	1	1	65	37	0.98	1	1	1	0	0	1	C
chr1	328326	G	S	5	1	16.67%	2	1	62	52	0.98	1	1	4	1	1	0	C
chr1	333138	T	K	3	2	40%	1	2	63	24	0.98	1	1	0	3	1	1	G
chr1	333388	T	Y	4	1	20%	2	1	64	43	0.98	1	1	2	2	1	0	C
chr1	335592	T	K	2	1	33.33%	1	1	58	39	0.98	1	1	2	0	1	0	G
chr1	336572	C	S	1	1	50%	1	1	58	38	0.98	1	1	0	1	0	1	G
chr1	347396	T	K	5	1	16.67%	2	1	62	52	0.98	1	1	2	3	1	0	G
chr1	359080	T	K	4	1	20%	2	1	61	42	0.98	1	1	1	3	0	1	G
chr1	360223	A	W	5	1	16.67%	2	1	54	52	0.98	1	1	2	3	0	1	T
chr1	361047	T	K	5	1	16.67%	2	1	62	50	0.98	1	1	2	3	0	1	G
chr1	366048	A	M	2	1	33.33%	2	1	65	39	0.98	1	1	1	1	0	1	C
chr1	368105	A	R	3	1	25%	2	1	55	40	0.98	1	1	2	1	0	1	G
chr1	373782	T	W	3	1	25%	2	1	64	41	0.98	1	1	2	1	1	0	A
chr1	378159	G	K	2	1	33.33%	2	1	63	41	0.98	1	1	1	1	0	1	T
chr1	383945	C	S	8	1	11.11%	2	1	58	57	0.98	1	1	2	6	1	0	G
chr1	389461	A	R	1	1	50%	1	1	65	36	0.98	1	1	1	0	1	0	G
chr1	396860	G	K	4	1	20%	1	1	65	43	0.98	1	1	0	4	0	1	T
chr1	397170	A	R	1	1	50%	1	1	65	36	0.98	1	1	1	0	1	0	G
chr1	399939	A	M	5	1	16.67%	2	1	63	46	0.98	1	1	1	4	0	1	C
chr1	400733	G	S	3	1	25%	1	1	65	41	0.98	1	1	3	0	0	1	C
chr1	401165	A	R	3	1	25%	2	1	64	41	0.98	1	1	1	2	0	1	G
chr1	406774	T	K	3	1	25%	2	1	58	39	0.98	1	1	2	1	0	1	G
chr1	417293	C	Y	2	1	33.33%	1	1	65	55	0.98	1	1	2	0	1	0	T
chr1	417723	G	S	2	1	33.33%	1	1	65	49	0.98	1	1	2	0	0	1	C
chr1	420308	C	M	1	1	50%	1	1	65	36	0.98	1	1	1	0	0	1	A
chr1	435579	C	Y	3	1	25%	1	1	64	40	0.98	1	1	0	3	0	1	T
chr1	437183	G	R	2	1	33.33%	1	1	65	39	0.98	1	1	0	2	0	1	A
chr1	437194	A	W	3	1	25%	1	1	64	41	0.98	1	1	0	3	0	1	T
chr1	438866	G	S	6	1	14.29%	2	1	62	52	0.98	1	1	5	1	0	1	C
chr1	446237	T	Y	3	1	25%	2	1	65	39	0.98	1	1	2	1	1	0	C
chr1	446308	A	R	2	1	33.33%	1	1	50	38	0.98	1	1	2	0	1	0	G
chr1	452322	A	M	1	1	50%	1	1	65	36	0.98	1	1	0	1	1	0	C
chr1	462721	T	K	1	1	50%	1	1	58	41	0.98	1	1	0	1	1	0	G
chr1	477145	C	S	2	1	33.33%	2	1	64	39	0.98	1	1	1	1	1	0	G
chr1	493772	G	S	3	1	25%	2	1	65	40	0.98	1	1	1	2	1	0	C
chr1	498962	C	M	2	1	33.33%	2	1	65	41	0.98	1	1	1	1	1	0	A
chr1	510532	T	Y	4	1	20%	2	1	64	53	0.98	1	1	2	2	1	0	C
chr1	516369	T	Y	1	1	50%	1	1	34	40	0.98	1	1	1	0	1	0	C
chr1	523631	G	K	3	1	25%	2	1	64	40	0.98	1	1	1	2	0	1	T
chr1	524680	C	Y	2	1	33.33%	1	1	65	41	0.98	1	1	0	2	0	1	T
chr1	525898	T	K	3	1	25%	2	1	62	49	0.98	1	1	2	1	1	0	G
chr1	526118	A	M	5	1	16.67%	2	1	61	50	0.98	1	1	2	3	0	1	C
chr1	535762	C	Y	3	1	25%	1	1	65	42	0.98	1	1	3	0	1	0	T
chr1	543235	G	K	1	1	50%	1	1	45	41	0.98	1	1	1	0	1	0	T
chr1	550086	T	Y	3	1	25%	1	1	50	41	0.98	1	1	3	0	1	0	C
chr1	550508	A	R	3	1	25%	2	1	55	40	0.98	1	1	1	2	0	1	G
chr1	551143	G	S	2	1	33.33%	1	1	65	39	0.98	1	1	0	2	1	0	C
chr1	552924	A	R	6	2	25%	2	2	62	38	0.98	1	1	4	2	1	1	G
chr1	553541	A	R	7	1	12.5%	2	1	65	52	0.98	1	1	4	3	0	1	G
chr1	560806	T	Y	5	1	16.67%	2	1	65	49	0.98	1	1	2	3	0	1	C
chr1	562736	C	S	5	1	16.67%	1	1	64	52	0.98	1	1	0	5	1	0	G
chr1	563224	T	Y	2	1	33.33%	1	1	51	39	0.98	1	1	2	0	1	0	C
chr1	564217	T	W	3	1	25%	2	1	62	40	0.98	1	1	1	2	0	1	A
chr1	567288	C	Y	2	1	33.33%	2	1	65	40	0.98	1	1	1	1	1	0	T
chr1	569652	T	Y	1	1	50%	1	1	48	42	0.98	1	1	1	0	0	1	C
chr1	570280	G	K	7	1	12.5%	2	1	60	53	0.98	1	1	1	6	0	1	T
chr1	582185	T	Y	1	1	50%	1	1	63	40	0.98	1	1	1	0	1	0	C
chr1	582453	G	S	1	1	50%	1	1	65	38	0.98	1	1	0	1	0	1	C
chr1	583477	T	K	2	1	33.33%	2	1	62	39	0.98	1	1	1	1	1	0	G
chr1	584179	G	K	3	1	25%	2	1	65	41	0.98	1	1	2	1	0	1	T
chr1	589074	G	S	2	1	33.33%	2	1	65	36	0.98	1	1	1	1	0	1	C
chr1	596641	C	S	2	1	33.33%	1	1	65	40	0.98	1	1	2	0	0	1	G
chr1	599263	G	K	2	1	33.33%	1	1	60	38	0.98	1	1	2	0	0	1	T