Mercurial > repos > yufei-luo > s_mart
view commons/core/parsing/test/data/sampleForTestVarscanToVCF.varscan @ 18:94ab73e8a190
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author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:20:15 -0400 |
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Chrom Position Ref Cons Reads1 Reads2 VarFreq Strands1 Strands2 Qual1 Qual2 Pvalue MapQual1 MapQual2 Reads1Plus Reads1Minus Reads2Plus Reads2Minus VarAllele chr1 10759 C Y 2 1 33.33% 1 1 65 47 0.98 1 1 0 2 0 1 T chr1 12438 C S 1 1 50% 1 1 62 42 0.98 1 1 0 1 0 1 G chr1 17432 A M 2 1 33.33% 1 1 55 37 0.98 1 1 0 2 1 0 C chr1 20391 A W 2 1 33.33% 1 1 56 37 0.98 1 1 2 0 1 0 T chr1 21207 T Y 2 1 33.33% 1 1 55 41 0.98 1 1 2 0 1 0 C chr1 26057 T K 11 2 15.38% 2 1 60 37 0.98 1 1 7 4 2 0 G chr1 36838 T Y 2 1 33.33% 1 1 61 36 0.98 1 1 2 0 0 1 C chr1 37751 A M 3 1 25% 1 1 65 42 0.98 1 1 0 3 0 1 C chr1 43500 C S 3 1 25% 2 1 65 40 0.98 1 1 2 1 0 1 G chr1 50481 A W 2 1 33.33% 1 1 60 40 0.98 1 1 0 2 1 0 T chr1 106849 C S 3 1 25% 2 1 65 40 0.98 1 1 2 1 1 0 G chr1 108726 T W 2 1 33.33% 1 1 50 41 0.98 1 1 0 2 0 1 A chr1 114204 G S 4 2 33.33% 2 2 60 39 0.98 1 1 2 2 1 1 C chr1 115030 A M 3 1 25% 2 1 57 41 0.98 1 1 2 1 1 0 C chr1 116173 A R 7 2 22.22% 2 1 58 39 0.98 1 1 5 2 2 0 G chr1 118433 G S 6 1 14.29% 2 1 64 50 0.98 1 1 4 2 1 0 C chr1 119042 A R 5 1 16.67% 2 1 55 51 0.98 1 1 2 3 1 0 G chr1 139219 A R 1 1 50% 1 1 65 46 0.98 1 1 1 0 0 1 G chr1 140710 A R 9 2 18.18% 2 1 63 41 0.98 1 1 3 6 0 2 G chr1 144419 T Y 3 1 25% 2 1 63 39 0.98 1 1 1 2 1 0 C chr1 146099 G S 2 1 33.33% 2 1 64 38 0.98 1 1 1 1 0 1 C chr1 146435 T Y 11 7 38.89% 2 1 60 24 0.98 1 1 4 7 7 0 C chr1 147232 A W 2 1 33.33% 2 1 64 39 0.98 1 1 1 1 0 1 T chr1 158703 A M 2 1 33.33% 2 1 60 55 0.98 1 1 1 1 1 0 C chr1 166732 A W 4 2 33.33% 2 2 62 24 0.98 1 1 2 2 1 1 T chr1 179887 C M 3 1 25% 2 1 64 39 0.98 1 1 1 2 1 0 A chr1 185971 A R 3 1 25% 2 1 55 40 0.98 1 1 2 1 0 1 G chr1 211074 A M 3 1 25% 1 1 65 40 0.98 1 1 3 0 0 1 C chr1 219573 G S 1 1 50% 1 1 61 41 0.98 1 1 1 0 0 1 C chr1 229396 C S 2 1 33.33% 2 1 57 39 0.98 1 1 1 1 0 1 G chr1 236388 T K 8 2 20% 2 1 52 32 0.98 1 1 2 6 0 2 G chr1 245990 G S 5 1 16.67% 2 1 61 46 0.98 1 1 3 2 1 0 C chr1 249155 C S 2 1 33.33% 2 1 62 37 0.98 1 1 1 1 1 0 G chr1 261257 T K 3 1 25% 1 1 60 39 0.98 1 1 0 3 0 1 G chr1 274692 A R 2 1 33.33% 2 1 63 39 0.98 1 1 1 1 0 1 G chr1 283468 G S 3 1 25% 2 1 63 45 0.98 1 1 2 1 1 0 C chr1 284288 T W 3 1 25% 2 1 64 39 0.98 1 1 2 1 1 0 A chr1 286983 T Y 2 1 33.33% 1 1 64 37 0.98 1 1 0 2 1 0 C chr1 287378 C M 2 1 33.33% 2 1 65 37 0.98 1 1 1 1 0 1 A chr1 302928 A R 1 1 50% 1 1 64 38 0.98 1 1 0 1 1 0 G chr1 305952 C M 2 1 33.33% 1 1 65 38 0.98 1 1 0 2 0 1 A chr1 307932 T Y 4 1 20% 2 1 65 42 0.98 1 1 1 3 0 1 C chr1 317422 G S 3 1 25% 1 1 57 40 0.98 1 1 0 3 0 1 C chr1 321480 A W 2 1 33.33% 1 1 64 38 0.98 1 1 2 0 0 1 T chr1 322307 A M 1 1 50% 1 1 65 37 0.98 1 1 1 0 0 1 C chr1 328326 G S 5 1 16.67% 2 1 62 52 0.98 1 1 4 1 1 0 C chr1 333138 T K 3 2 40% 1 2 63 24 0.98 1 1 0 3 1 1 G chr1 333388 T Y 4 1 20% 2 1 64 43 0.98 1 1 2 2 1 0 C chr1 335592 T K 2 1 33.33% 1 1 58 39 0.98 1 1 2 0 1 0 G chr1 336572 C S 1 1 50% 1 1 58 38 0.98 1 1 0 1 0 1 G chr1 347396 T K 5 1 16.67% 2 1 62 52 0.98 1 1 2 3 1 0 G chr1 359080 T K 4 1 20% 2 1 61 42 0.98 1 1 1 3 0 1 G chr1 360223 A W 5 1 16.67% 2 1 54 52 0.98 1 1 2 3 0 1 T chr1 361047 T K 5 1 16.67% 2 1 62 50 0.98 1 1 2 3 0 1 G chr1 366048 A M 2 1 33.33% 2 1 65 39 0.98 1 1 1 1 0 1 C chr1 368105 A R 3 1 25% 2 1 55 40 0.98 1 1 2 1 0 1 G chr1 373782 T W 3 1 25% 2 1 64 41 0.98 1 1 2 1 1 0 A chr1 378159 G K 2 1 33.33% 2 1 63 41 0.98 1 1 1 1 0 1 T chr1 383945 C S 8 1 11.11% 2 1 58 57 0.98 1 1 2 6 1 0 G chr1 389461 A R 1 1 50% 1 1 65 36 0.98 1 1 1 0 1 0 G chr1 396860 G K 4 1 20% 1 1 65 43 0.98 1 1 0 4 0 1 T chr1 397170 A R 1 1 50% 1 1 65 36 0.98 1 1 1 0 1 0 G chr1 399939 A M 5 1 16.67% 2 1 63 46 0.98 1 1 1 4 0 1 C chr1 400733 G S 3 1 25% 1 1 65 41 0.98 1 1 3 0 0 1 C chr1 401165 A R 3 1 25% 2 1 64 41 0.98 1 1 1 2 0 1 G chr1 406774 T K 3 1 25% 2 1 58 39 0.98 1 1 2 1 0 1 G chr1 417293 C Y 2 1 33.33% 1 1 65 55 0.98 1 1 2 0 1 0 T chr1 417723 G S 2 1 33.33% 1 1 65 49 0.98 1 1 2 0 0 1 C chr1 420308 C M 1 1 50% 1 1 65 36 0.98 1 1 1 0 0 1 A chr1 435579 C Y 3 1 25% 1 1 64 40 0.98 1 1 0 3 0 1 T chr1 437183 G R 2 1 33.33% 1 1 65 39 0.98 1 1 0 2 0 1 A chr1 437194 A W 3 1 25% 1 1 64 41 0.98 1 1 0 3 0 1 T chr1 438866 G S 6 1 14.29% 2 1 62 52 0.98 1 1 5 1 0 1 C chr1 446237 T Y 3 1 25% 2 1 65 39 0.98 1 1 2 1 1 0 C chr1 446308 A R 2 1 33.33% 1 1 50 38 0.98 1 1 2 0 1 0 G chr1 452322 A M 1 1 50% 1 1 65 36 0.98 1 1 0 1 1 0 C chr1 462721 T K 1 1 50% 1 1 58 41 0.98 1 1 0 1 1 0 G chr1 477145 C S 2 1 33.33% 2 1 64 39 0.98 1 1 1 1 1 0 G chr1 493772 G S 3 1 25% 2 1 65 40 0.98 1 1 1 2 1 0 C chr1 498962 C M 2 1 33.33% 2 1 65 41 0.98 1 1 1 1 1 0 A chr1 510532 T Y 4 1 20% 2 1 64 53 0.98 1 1 2 2 1 0 C chr1 516369 T Y 1 1 50% 1 1 34 40 0.98 1 1 1 0 1 0 C chr1 523631 G K 3 1 25% 2 1 64 40 0.98 1 1 1 2 0 1 T chr1 524680 C Y 2 1 33.33% 1 1 65 41 0.98 1 1 0 2 0 1 T chr1 525898 T K 3 1 25% 2 1 62 49 0.98 1 1 2 1 1 0 G chr1 526118 A M 5 1 16.67% 2 1 61 50 0.98 1 1 2 3 0 1 C chr1 535762 C Y 3 1 25% 1 1 65 42 0.98 1 1 3 0 1 0 T chr1 543235 G K 1 1 50% 1 1 45 41 0.98 1 1 1 0 1 0 T chr1 550086 T Y 3 1 25% 1 1 50 41 0.98 1 1 3 0 1 0 C chr1 550508 A R 3 1 25% 2 1 55 40 0.98 1 1 1 2 0 1 G chr1 551143 G S 2 1 33.33% 1 1 65 39 0.98 1 1 0 2 1 0 C chr1 552924 A R 6 2 25% 2 2 62 38 0.98 1 1 4 2 1 1 G chr1 553541 A R 7 1 12.5% 2 1 65 52 0.98 1 1 4 3 0 1 G chr1 560806 T Y 5 1 16.67% 2 1 65 49 0.98 1 1 2 3 0 1 C chr1 562736 C S 5 1 16.67% 1 1 64 52 0.98 1 1 0 5 1 0 G chr1 563224 T Y 2 1 33.33% 1 1 51 39 0.98 1 1 2 0 1 0 C chr1 564217 T W 3 1 25% 2 1 62 40 0.98 1 1 1 2 0 1 A chr1 567288 C Y 2 1 33.33% 2 1 65 40 0.98 1 1 1 1 1 0 T chr1 569652 T Y 1 1 50% 1 1 48 42 0.98 1 1 1 0 0 1 C chr1 570280 G K 7 1 12.5% 2 1 60 53 0.98 1 1 1 6 0 1 T chr1 582185 T Y 1 1 50% 1 1 63 40 0.98 1 1 1 0 1 0 C chr1 582453 G S 1 1 50% 1 1 65 38 0.98 1 1 0 1 0 1 C chr1 583477 T K 2 1 33.33% 2 1 62 39 0.98 1 1 1 1 1 0 G chr1 584179 G K 3 1 25% 2 1 65 41 0.98 1 1 2 1 0 1 T chr1 589074 G S 2 1 33.33% 2 1 65 36 0.98 1 1 1 1 0 1 C chr1 596641 C S 2 1 33.33% 1 1 65 40 0.98 1 1 2 0 0 1 G chr1 599263 G K 2 1 33.33% 1 1 60 38 0.98 1 1 2 0 0 1 T