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view commons/pyRepetUnit/hmmer/tests/datas/configTestAcceptanceHmmpfamAndParse2alignLauncherInparallel.cfg @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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[db_config]
user: oinizan
host: pisano
passwd: oinizan
dbname:repet_oinizan

[profil_search]
Evalue: 10
InputFormat: FASTA
ProfilDatabank: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/myhmms

[hmmer_config]
output_file: ./datas/hmmpfam_output
result_dir: /home/oinizan/repet_integration/repet_results
query_dir: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/batches
tmp_dir: /home/oinizan/repet_integration/repet_tmp

[sge_config]
queue: main.q
groupid: fake

[parse_config]
scriptToLaunch: /home/oinizan/repet_integration/repet_pipe/repet_base/HmmOutput2alignAndTransformCoordInNtAndFilterScores_script.py

[dbSplit_config]
input_file: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/test_input_aa.fa

[hmmpfam2align_config]
output_file: ./datas/hmmpfam_outputNotInParallel.align