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view SMART/galaxy/getWigData.xml @ 33:aa0420172fc6

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author m-zytnicki
date Tue, 30 Apr 2013 14:34:53 -0400
parents 0ab839023fe4
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<tool id="getWigData" name="get wig data">
    <description>Compute the average data for some genomic coordinates using WIG files</description>
    <command interpreter="python">
		../Java/Python/getWigData.py -i $inputGff3File -f gff3 -w $inputWigFile -t $tagName -$strand -o $outputFile
	</command>
	
    <inputs>
    	<param name="inputGff3File" type="data" label="Input Gff3 File (compulsory option)" format="gff3"/>
   		<param name="inputWigFile" type="data" label="Input Wig File (compulsory option)" format="wig"/>
		<param name="tagName" type="text" value="None" label="tag option (compulsory option)" help="choose a tag name to write the wig information to output file."/>
		<param name="strand" type="boolean" truevalue="-s" falsevalue="" checked="false" label="consider both strands separately."/>    
    </inputs>
        
    <outputs>
        <data format="gff3" name="outputFile" label="[getWigData -> gff3] Output File"/>       
    </outputs> 
</tool>