view commons/core/sql/ITableSeqAdaptator.py @ 14:c79b9ae3f65f

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# Copyright INRA (Institut National de la Recherche Agronomique)
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## Interface for TableSeqAdaptator
#
class ITableSeqAdaptator(object):

    ## Retrieve all the distinct accession names in a list.
    #
    # @return lAccessions list of accessions
    #
    # @warning old name was getListAccession
    #
    def getAccessionsList( self ):
        pass
    
    ## Save sequences in a fasta file from a list of accession names.
    # 
    # @param lAccessions list of accessions
    # @param outFileName string Fasta file
    #
    # @warning old name saveListAccessionInFastaFile
    #
    def saveAccessionsListInFastaFile( self, lAccessions, outFileName ):
        pass
    
    ## insert bioseq instance
    #
    # @param seq bioseq 
    # @param delayed boolean must the insert be delayed 
    # 
    # @warning old name was insASeq
    #
    def insert(self, seq, delayed = False):
        pass