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view smart_toolShed/SMART/galaxy/CountReadGCPercent.xml @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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<tool id="CountReadGCPercent" name="count read GCpercent">
    <description>Count GC percent for each read against a genome.</description>
    <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
  <inputs>
      <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
      <param name="inputGffFile" type="data" label="Input File" format="gff3"/>
  </inputs>

  <outputs>
    <data format="gff3" name="outputFile" label="[CountReadGCPercent] Output File"/>
   </outputs>

  <help>
  </help>
</tool>