view smart_toolShed/SMART/galaxy/changeGffFeatures.xml @ 0:e0f8dcca02ed

Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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<tool id="changeGffFeatures" name="change gff Features">
	<description>Changes one feature name by an other name (the feature name can be found on the 3rd column).</description>
		<command interpreter="bash">
			../Java/Python/ $inputFile $inputFeature $outputFeature >$outputFile
	      <param name="inputFile" type="data" label="Input File" format="gff"/>	
	      <param name="inputFeature" type="text" value="exon" label="A given feature, you must choose a feature name(on the 3rd column)."/>
	      <param name="outputFeature" type="text" value="exon" label="You must choose an other feature name(on the 3rd column)."/>

             <data name="outputFile" format="gff" label="[changeGffFeatures] Output File"/>