Mercurial > repos > yufei-luo > s_mart
view smart_toolShed/commons/core/checker/test/Test_ConfigValue.py @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
| parents | |
| children |
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import unittest from commons.core.checker.ConfigValue import ConfigValue class Test_ConfigValue(unittest.TestCase): def setUp(self): self._iConfigValue = ConfigValue() def test__eq__True(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } iConfigValue1 = ConfigValue() iConfigValue1.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } self.assertEqual(self._iConfigValue, iConfigValue1) def test__eq__False_not_same_section(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organisms" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } iConfigValue1 = ConfigValue() iConfigValue1.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } self.assertNotEqual(self._iConfigValue, iConfigValue1) def test__eq__False_not_same_option(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "family":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } iConfigValue1 = ConfigValue() iConfigValue1.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } self.assertNotEqual(self._iConfigValue, iConfigValue1) def test__eq__False_not_same_value(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"vitis", "species":"aestivum", "common_name":"wheat", "comment":""} } iConfigValue1 = ConfigValue() iConfigValue1.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } self.assertNotEqual(self._iConfigValue, iConfigValue1) def test_has_section_true(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } obsSectionExist = self._iConfigValue.has_section("organism") self.assertTrue(obsSectionExist) def test_has_section_false(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } obsSectionExist = self._iConfigValue.has_section("toto") self.assertFalse(obsSectionExist) def test_has_option_true(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } obsOptionExist = self._iConfigValue.has_option("organism","genus") self.assertTrue(obsOptionExist) def test_has_option_false(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } obsOptionExist = self._iConfigValue.has_option("organism","toto") self.assertFalse(obsOptionExist) obsOptionExist = self._iConfigValue.has_option("toto","genus") self.assertFalse(obsOptionExist) def test_sections(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } expListSections = ["dir_name", "organism"] obsListSections = self._iConfigValue.sections() self.assertEquals(expListSections, obsListSections) def test_sections_empty_config(self): self._iConfigValue.dOptionsValues4Sections = {} expListSections = [] obsListSections = self._iConfigValue.sections() self.assertEquals(expListSections, obsListSections) def test_options(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } expListOptions = ['abbreviation', 'common_name', 'genus', 'species', 'comment'] obsListOptions = self._iConfigValue.options("organism") self.assertEquals(expListOptions, obsListOptions) expListOptions = ["work_dir"] obsListOptions = self._iConfigValue.options("dir_name") self.assertEquals(expListOptions, obsListOptions) def test_options_empty_config(self): self._iConfigValue.dOptionsValues4Sections = {} expListOptions = [] obsListOptions = self._iConfigValue.options("toto") self.assertEquals(expListOptions, obsListOptions) def test_set(self): self._iConfigValue.dOptionsValues4Sections = {} expDictOptionsValue = {"dir_name" : {"work_dir":"toto"}} self._iConfigValue.set("dir_name", "work_dir", "toto") obsDictOptionsValue = self._iConfigValue.dOptionsValues4Sections self.assertEquals(expDictOptionsValue, obsDictOptionsValue) def test_get(self): self._iConfigValue.dOptionsValues4Sections = { "dir_name" : {"work_dir":"toto"}, "organism" : {"abbreviation":"T.aestivum", "genus":"triticum", "species":"aestivum", "common_name":"wheat", "comment":""} } expValue = "aestivum" obsValue = self._iConfigValue.get("organism", "species") self.assertEquals(expValue, obsValue) expValue = None obsValue = self._iConfigValue.get("toto", "species") self.assertEquals(expValue, obsValue) expValue = None obsValue = self._iConfigValue.get("organism", "dummyopt") self.assertEquals(expValue, obsValue) if __name__ == "__main__": unittest.main()