view smart_toolShed/commons/core/parsing/test/data/testCoordsParser.coords @ 0:e0f8dcca02ed

Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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/home/urgi/genome_alignment/data/banks/arabidopsis/lyrata/ara_lyra_sca1.fa /home/urgi/genome_alignment/data/banks/arabidopsis/thaliana/ara_thal_chr1.fa
NUCMER

    [S1]     [E1]  |     [S2]     [E2]  |  [LEN 1]  [LEN 2]  |  [% IDY]  | [TAGS]
=====================================================================================
       1     6251  |   421251   415029  |     6251     6223  |    89.03  | scaffold_1	gi|240254421:1-30427671
    9127    11947  |   414945   412123  |     2821     2823  |    90.45  | scaffold_1	gi|240254421:1-30427671
   12201    12953  |   411933   411173  |      753      761  |    82.56  | scaffold_1	gi|240254421:1-30427671
   13086    20401  |   411034   403760  |     7316     7275  |    88.56  | scaffold_1	gi|240254421:1-30427671
   20482    20686  |   403573   403369  |      205      205  |    94.66  | scaffold_1	gi|240254421:1-30427671
   32288    32623  |   402639   402280  |      336      360  |    76.52  | scaffold_1	gi|240254421:1-30427671
   32936    33572  |   401974   401308  |      637      667  |    79.80  | scaffold_1	gi|240254421:1-30427671
   33748    35013  |   401256   400080  |     1266     1177  |    82.77  | scaffold_1	gi|240254421:1-30427671
   35456    44084  |   399895   391566  |     8629     8330  |    86.23  | scaffold_1	gi|240254421:1-30427671
   44401    45265  |   391569   390737  |      865      833  |    90.40  | scaffold_1	gi|240254421:1-30427671
   45374    46243  |   390633   389755  |      870      879  |    71.70  | scaffold_1	gi|240254421:1-30427671
   46366    48958  |   389607   387128  |     2593     2480  |    82.32  | scaffold_1	gi|240254421:1-30427671
   55079    55160  |   369603   369683  |       82       81  |    93.90  | scaffold_1	gi|240254421:1-30427671
   55407    56537  |   369910   371016  |     1131     1107  |    81.69  | scaffold_1	gi|240254421:1-30427671