Merges two reads if they have exactly the same genomic coordinates.
../Java/Python/CollapseReads.py -i $formatType.inputFileName
#if $formatType.FormatInputFileName == 'bed':
-f bed
#elif $formatType.FormatInputFileName == 'gff':
-f gff
#elif $formatType.FormatInputFileName == 'gff2':
-f gff2
#elif $formatType.FormatInputFileName == 'gff3':
-f gff3
#end if
-$strand
-o $outputFileGff
--galaxy