Coordinates to Sequences: Extract the sequences from a list of coordinates.
../Java/Python/coordinatesToSequence.py -i $formatType.inputFileName1
#if $formatType.FormatInputFileName1 == 'bed':
-f bed
#elif $formatType.FormatInputFileName1 == 'gff':
-f gff
#elif $formatType.FormatInputFileName1 == 'gff2':
-f gff2
#elif $formatType.FormatInputFileName1 == 'gff3':
-f gff3
#elif $formatType.FormatInputFileName1 == 'sam':
-f sam
#elif $formatType.FormatInputFileName1 == 'gtf':
-f gtf
#end if
-s $sequence
-o $outputFileFasta