# HG changeset patch
# User yufei-luo
# Date 1358438652 18000
# Node ID 4eaf0e192d115785880e6839616866dd859f69ed
# Parent  7c697a8bde9f2c2ef2996e58733a90a96c16bbc2
Uploaded

diff -r 7c697a8bde9f -r 4eaf0e192d11 smart_toolShed/README.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/smart_toolShed/README.txt	Thu Jan 17 11:04:12 2013 -0500
@@ -0,0 +1,61 @@
+----------
+|  NAME  |
+----------
+S-MART
+
+
+Description
+-----------
+Several tools are now available for mapping high-throughput sequencing data from a genome, but few can extract biological knowledge from the mapped reads. We have developed a toolbox, S-MART, which handles mapped RNA-Seq and ChIP-Seq data.
+
+S-MART is an intuitive and lightweight tool, performing several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization.
+
+S-MART does not require a computer science background and thus can be used by all biologists through a graphical interface. S-MART can run on any personal computer, yielding results within an hour for most queries. 
+
+
+Instructions
+------------
+Environment Installation :
+1). Put the downloaded S-MART directories into your Galaxy tools directory.
+2). Open .bashrc (if it dosen't exist, create one).
+Write or add the S-MART directory path to PYTHONPATH :
+export PYTHONPATH=S-MART_PATH:/usr/lib/python2.7/
+(ex. export PYTHONPATH=/home/user/galaxy-dist/tools/smart_toolShed/)
+3). Run .bashrc using . .bashrc command.
+
+Supplementary Softwares :
+Installation instructions and the user guide are available in the file
+"documentation.pdf".
+
+
+Copyright
+---------
+Copyright INRA-URGI 2009-2013
+
+
+Authors
+-------
+Matthias Zytnicki
+
+
+Contact
+-------
+urgi-support@versailles.inra.fr
+
+
+License
+-------
+This library is distributed under the terms of the CeCILL license 
+(http://www.cecill.info/index.en.html).
+See the LICENSE.txt file.
+
+
+Acknowledgements
+----------------
+This product needs the following softwares :
+ * R, under the GNU General Public License
+ * MySQL, under the GNU General Public License
+ * Python, under the Python License, compatible with the GNU General Public License
+ * MySQL for Python, under the GNU General Public License
+ * Java, under the GNU General Public License
+