# HG changeset patch
# User yufei-luo
# Date 1358438569 18000
# Node ID 7c697a8bde9f2c2ef2996e58733a90a96c16bbc2
# Parent  30c5431d8ce41c3706a4cbc4048394ed59b5de6e
Deleted selected files

diff -r 30c5431d8ce4 -r 7c697a8bde9f smart_toolShed/README.pdf
Binary file smart_toolShed/README.pdf has changed
diff -r 30c5431d8ce4 -r 7c697a8bde9f smart_toolShed/README.txt
--- a/smart_toolShed/README.txt	Thu Jan 17 11:01:51 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,60 +0,0 @@
-----------
-|  NAME  |
-----------
-S-MART
-
-
-Description
------------
-Several tools are now available for mapping high-throughput sequencing data from a genome, but few can extract biological knowledge from the mapped reads. We have developed a toolbox, S-MART, which handles mapped RNA-Seq and ChIP-Seq data.
-
-S-MART is an intuitive and lightweight tool, performing several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization.
-
-S-MART does not require a computer science background and thus can be used by all biologists through a graphical interface. S-MART can run on any personal computer, yielding results within an hour for most queries. 
-
-
-Instructions
-------------
-Environment Installation :
-1). Put the downloaded S-MART directories into your Galaxy tools directory.
-2). Open .bashrc (if it dosen't exist, create one).
-Write or add the S-MART directory path to PYTHONPATH :
-export PYTHONPATH=S-MART_PATH:/usr/lib/python2.7/
-(ex. export PYTHONPATH=/home/user/galaxy-dist/tools/smart_toolShed/)
-3). Run .bashrc using . .bashrc command.
-
-Supplementary Softwares :
-Installation instructions and the user guide are available in the file "doc.pdf".
-
-
-Copyright
----------
-Copyright INRA-URGI 2009-2013
-
-
-Authors
--------
-Matthias Zytnicki
-
-
-Contact
--------
-urgi-support@versailles.inra.fr
-
-
-License
--------
-This library is distributed under the terms of the CeCILL license 
-(http://www.cecill.info/index.en.html).
-See the LICENSE.txt file.
-
-
-Acknowledgements
-----------------
-This product needs the following softwares :
- * R, under the GNU General Public License
- * MySQL, under the GNU General Public License
- * Python, under the Python License, compatible with the GNU General Public License
- * MySQL for Python, under the GNU General Public License
- * Java, under the GNU General Public License
-
diff -r 30c5431d8ce4 -r 7c697a8bde9f smart_toolShed/SMART/Java/README.txt
--- a/smart_toolShed/SMART/Java/README.txt	Thu Jan 17 11:01:51 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,51 +0,0 @@
-----------
-|  NAME  |
-----------
-S-MART
-
-
-Description
------------
-Several tools are now available for mapping high-throughput sequencing data from a genome, but few can extract biological knowledge from the mapped reads. We have developed a toolbox, S-MART, which handles mapped RNA-Seq and ChIP-Seq data.
-
-S-MART is an intuitive and lightweight tool, performing several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization.
-
-S-MART does not require a computer science background and thus can be used by all biologists through a graphical interface. S-MART can run on any personal computer, yielding results within an hour for most queries. 
-
-
-Instructions
-------------
-Installation instructions and the user guide are available in the file "doc.pdf".
-
-
-Copyright
----------
-Copyright INRA-URGI 2009-2010
-
-
-Authors
--------
-Matthias Zytnicki
-
-
-Contact
--------
-urgi-contact@versailles.inra.fr
-
-
-License
--------
-This library is distributed under the terms of the CeCILL license 
-(http://www.cecill.info/index.en.html).
-See the LICENSE.txt file.
-
-
-Acknowledgements
-----------------
-This product needs the following softwares :
- * R, under the GNU General Public License
- * MySQL, under the GNU General Public License
- * Python, under the Python License, compatible with the GNU General Public License
- * MySQL for Python, under the GNU General Public License
- * Java, under the GNU General Public License
-
diff -r 30c5431d8ce4 -r 7c697a8bde9f smart_toolShed/SMART/Java/doc.pdf
Binary file smart_toolShed/SMART/Java/doc.pdf has changed