Mercurial > repos > yutaka-saito > bisulfighter
view Galaxy-Workflow-bisulfighter.ga @ 0:5a5d062e3b33 draft default tip
Uploaded
author | yutaka-saito |
---|---|
date | Sun, 19 Apr 2015 11:21:51 -0400 |
parents | |
children |
line wrap: on
line source
{ "a_galaxy_workflow": "true", "annotation": "", "format-version": "0.1", "name": "bisulfighter", "steps": { "0": { "annotation": "", "id": 0, "input_connections": {}, "inputs": [ { "description": "", "name": "single-end fastq reads for sample1" } ], "label": null, "name": "Input dataset", "outputs": [], "position": { "left": 200, "top": 200 }, "tool_errors": null, "tool_id": null, "tool_state": "{\"name\": \"single-end fastq reads for sample1\"}", "tool_version": null, "type": "data_input", "user_outputs": [], "uuid": "e06f739a-dceb-4277-adaa-421fa3c8b404" }, "1": { "annotation": "", "id": 1, "input_connections": {}, "inputs": [ { "description": "", "name": "single-end fastq reads for sample2" } ], "label": null, "name": "Input dataset", "outputs": [], "position": { "left": 200, "top": 285 }, "tool_errors": null, "tool_id": null, "tool_state": "{\"name\": \"single-end fastq reads for sample2\"}", "tool_version": null, "type": "data_input", "user_outputs": [], "uuid": "6aae6752-e196-47ec-bd17-e348c9e274cb" }, "2": { "annotation": "", "id": 2, "input_connections": { "read|in": { "id": 0, "output_name": "output" } }, "inputs": [ { "description": "runtime parameter for tool bsfcall", "name": "reference" } ], "label": null, "name": "bsfcall", "outputs": [ { "name": "outres", "type": "tabular" }, { "name": "outlog", "type": "txt" } ], "position": { "left": 435, "top": 200 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/yutaka-saito/bsfcall/bsfcall/1.0.0", "tool_state": "{\"read\": \"{\\\"end\\\": \\\"single-end\\\", \\\"__current_case__\\\": 0, \\\"in\\\": null}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"reference\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\"}", "tool_version": "1.0.0", "type": "tool", "user_outputs": [], "uuid": "9b5f9915-d4e4-41c7-bb0b-4188579abf35" }, "3": { "annotation": "", "id": 3, "input_connections": { "read|in": { "id": 1, "output_name": "output" } }, "inputs": [ { "description": "runtime parameter for tool bsfcall", "name": "reference" } ], "label": null, "name": "bsfcall", "outputs": [ { "name": "outres", "type": "tabular" }, { "name": "outlog", "type": "txt" } ], "position": { "left": 435, "top": 358 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/yutaka-saito/bsfcall/bsfcall/1.0.0", "tool_state": "{\"read\": \"{\\\"end\\\": \\\"single-end\\\", \\\"__current_case__\\\": 0, \\\"in\\\": null}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"reference\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\"}", "tool_version": "1.0.0", "type": "tool", "user_outputs": [], "uuid": "04af3b7b-35a9-4bfd-a6f5-1b1c84fb1185" }, "4": { "annotation": "", "id": 4, "input_connections": { "intype|in1": { "id": 2, "output_name": "outres" }, "intype|in2": { "id": 3, "output_name": "outres" } }, "inputs": [], "label": null, "name": "ComMet", "outputs": [ { "name": "outdmc", "type": "tabular" }, { "name": "outdmr", "type": "tabular" } ], "position": { "left": 763, "top": 200 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/yutaka-saito/commet/ComMet/1.0.0", "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"intype\": \"{\\\"in2\\\": null, \\\"mapper\\\": \\\"bsf-call\\\", \\\"in1\\\": null, \\\"__current_case__\\\": 0}\"}", "tool_version": "1.0.0", "type": "tool", "user_outputs": [], "uuid": "4e503e50-4023-45e8-8738-27e0fdcce949" } }, "uuid": "9d6d0530-2ed9-4346-91a5-02d8464be49c" }