Mercurial > repos > zeamxie > viewbs
comparison run_step2_kobas.sh @ 0:21bf5bc8b28f draft default tip
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| author | zeamxie |
|---|---|
| date | Fri, 29 Jul 2016 16:32:52 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:21bf5bc8b28f |
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| 1 #!/bin/sh -l | |
| 2 #PBS -q bioinf | |
| 3 #PBS -l nodes=1:ppn=1 | |
| 4 #PBS -l walltime=4:00:00 | |
| 5 #PBS -N run_step2_kobas | |
| 6 #PBS -o run_step2_kobas.out | |
| 7 #PBS -e run_step2_kobas.err | |
| 8 #PBS -m bea | |
| 9 cd $PBS_O_WORKDIR | |
| 10 module load bioinfo python | |
| 11 #/group/bioinfo/apps/apps/kobas-2.1.0/scripts/annotate.py | |
| 12 module load bioinfo KOBAS | |
| 13 module load blast | |
| 14 | |
| 15 annotate.py -i diffPeak_DiffBind_H3K9me2_all_genes.decre.fil5k.fa -t fasta:pro -s pvu -o diffPeak_DiffBind_H3K9me2_all_genes.decre.fil5k.anno1 |