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changeset 0:21bf5bc8b28f draft default tip

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author zeamxie
date Fri, 29 Jul 2016 16:32:52 -0400
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files run_step2_kobas.sh
diffstat 1 files changed, 15 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/run_step2_kobas.sh	Fri Jul 29 16:32:52 2016 -0400
@@ -0,0 +1,15 @@
+#!/bin/sh -l
+#PBS -q bioinf
+#PBS -l nodes=1:ppn=1
+#PBS -l walltime=4:00:00
+#PBS -N run_step2_kobas
+#PBS -o run_step2_kobas.out
+#PBS -e run_step2_kobas.err
+#PBS -m bea
+cd $PBS_O_WORKDIR
+module load bioinfo python
+#/group/bioinfo/apps/apps/kobas-2.1.0/scripts/annotate.py
+module load bioinfo KOBAS
+module load blast
+
+annotate.py -i diffPeak_DiffBind_H3K9me2_all_genes.decre.fil5k.fa -t fasta:pro -s pvu -o diffPeak_DiffBind_H3K9me2_all_genes.decre.fil5k.anno1