Mercurial > repos > ziru-zhou > bamedit
view tool_dependencies.xml @ 6:44ed69152a1e draft
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author | ziru-zhou |
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date | Tue, 18 Dec 2012 09:35:39 -0500 |
parents | 671c4c5ce125 |
children | f3a394b6cbb7 |
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<?xml version="1.0"?> <tool_dependency> <set_environment version="1.0"> <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> </set_environment> <package name="samtools" version="0.1.12"> <install version="1.0"> <actions> <action type="shell_command">wget https://github.com/modENCODE-DCC/Galaxy/blob/master/tool_shed_dependencies/bamedit/samtoolspkg.tar</action> <action type="shell_command">chmod ago+x samtools</action> <action type="shell_command">chmod ago+x maq2sam-long</action> <action type="move_file"> <source>samtools</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="move_file"> <source>maq2sam-long</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme>Compiling SAMtools requires the ncurses and zlib development libraries.</readme> </package> </tool_dependency>