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Get.groups (version 1.39.5.0)

group or count_table file:

shared - OTU Shared:

design - assign groups to new grouping:

design has 2 columns: group(col 1) and grouping(col 2) (separated by a TAB character) use make.design

Select Group Names from:

groups - Pick groups to include:

fasta - Fasta Sequences:

name - Sequences Name reference:

list - OTU List:

taxonomy - Taxonomy:

phylip - Distance Matrix you would like to select distances from:

must be a phylip-formatted distance matrix

column - Distance Matrix you would like to select distances from:

must be a column-formatted distance matrix

Output logfile?:

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The get.groups command selects sequences from a specific group or set of groups from the following file types: fasta, fasta, name, group, list, taxonomy.