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Get.sharedseqs (version 1.21.0)

list - OTU List or shared file:

group - not required if using a shared file:

label - Select OTU Labels to include:

By default all are included if no selection is made.

fasta - Dataset:

Select Groups:

output - select the output format:

accnos can be used with get.seqs, list.seqs and remove.seqs

Create a new history dataset for each label:

Mothur Overview

Mothur, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan, provides bioinformatics for the microbial ecology community.

Command Documenation

The get.sharedseqs command takes a list and group file and outputs a .shared.seqs file for each distance. This is useful for those cases where you might be interested in identifying sequences that are either unique or shared by specific groups, which you could then classify.

v1.21.0: Updated to Mothur 1.33, added shared file option