Galaxy | Tool Preview
Repository Actions
View repository
View change log
Browse repository tip files
Download as a .tar.gz file
Download as a .tar.bz2 file
Download as a zip file
Chado load fasta (version 2.3.9+galaxy0)
Chado Database:
If you select 'Remote database' make sure credentials are defined in environment variables
Fasta:
Path to the Fasta file to load
Organism:
Analysis:
Sequence Type:
this should be a Sequence Ontology term
Name regular expression:
Regular expression to extract the feature name from the fasta sequence id (first capturing group will be used).
Uniquename regular expression:
Regular expression to extract the feature name from the fasta sequence id (first capturing group will be used).
Match on name:
Match existing features using their name instead of their uniquename
Update:
Update existing feature with new sequence instead of throwing an error
Relationship type:
Use this when inserting features that should be associated to other already existing features
Cross references to external databases
Cross references to external database 0
Run this only after the following dataset is ready:
Use this if you want to delay the job execution until some data is already loaded. The selected dataset will not be used for anything else.
Load features from a fasta file