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Trinity (version 0.0.1)

Paired or Single-end data?:

Left/Forward strand reads:

Right/Reverse strand reads:

Strand-specific Library Type:

Group pairs distance:

Maximum length expected between fragment pairs

Path reinforcement distance:

Minimum read overlap required for path extension in the graph

Use Additional Params?:

Trinity is a de novo transcript assembler that uses RNA-seq data as input. This tool runs all Trinity commands--Inchworm, Chrysalis, and Butterfly--in a single pass. This version of Trinity runs on Bridges at the Pittsburgh Supercomputing Center using a version of Trinity 2.2.0 optimized for the unique memory profile of that system.