Galaxy |

MiGMAP (version 1.0.3+galaxy2)

input:

Species:

Receptor and Chain:

Quality Theshold:

Threshold for average quality of mutations and N-regions of CDR3 (only relevant for fastq input)

Report clonotypes with partial CDR3 mapping:

use all alleles during alignemt (default = only major (*01) alleles):

Report clonotypes with no CDR3:

Report clonotypes that have non-canonical CDR3:

Report non-coding clonotypes (stop codon or frameshift):

Report mapping details for each read:

This software is a smart wrapper for the IgBlast V-(D)-J mapping tool designed to facilitate analysis immune receptor libraries profiled using high-throughput sequencing