Galaxy | Tool Preview

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hicAdjustMatrix (version 3.7.2+galaxy0)

Matrix to compute on:

Apply action:

List of chromosomes or a BED file containg regions:

BED file with all regions to be considered:

Should contain the regions which should be kept, removed or masked.

Remove inter- or intra chromosomal regions:

Adjust of the Hi-C matrix

This tool is able to remove, keep or mask given regions of a Hi-C interaction matrix, including entire chromosomes.

For more information about HiCExplorer please consider our documentation on readthedocs.io