Authors Dereeper Alexis (alexis.dereeper@ird.fr), IRD, South Green platform
Please cite "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", Dereeper A. et al., Nucl. Acids Res. (1 july 2015) 43 (W1).
Galaxy integration Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)
Support For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
HapmapToMLMMFiles converts a hapmap file into input files compatible with the MLMM software.
SNP Info file
Genotyping file for MLMM
rs# alleles chrom pos strand assembly# center protLSID assayLSID panel QCcode Ind1 Ind2 SNP1 A/T 1 3102 + assembly NA NA NA speciesname NA AA AA AA SNP2 A/T 1 4648 + assembly NA NA NA speciesname NA AA AA AA
SNP Chr Pos SNP1 1 3102 SNP2 1 4648 SNP3 1 7601
Ind_id SNP1 SNP2 SNP3 SNP4 SNP5 SNP6 SNP7 SNP8 SNP9 SNP10 SNP11 SNP12 SNP13 SNP14 Ind1 0 0 0 0 0 0 2 0 2 0 0 0 2 0 Ind2 0 0 0 0 0 2 2 0 0 0 0 0 0 0