What it does

This tool uses the SAMTools toolkit to sort alignments by leftmost coordinates or read names.

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Citation

For the underlying tool, please cite Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9.

If you use this tool in Galaxy, please cite Blankenberg D, et al. In preparation.