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Seq.error (version 1.39.5.0)

fasta - Candidate Sequences:

sequences must be aligned

Select Reference Template from:

reference - Select an alignment database:

name - Sequences Name reference:

Include a quality file and an alignment report as inputs:

count table:

threshold - error rate at which to report (default 1.):

ignorechimeras - :

Output logfile?:

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The seq.error command evaluates error rate for sequences by comparing to the fasta-formatted template_alignment. This is demonstrated in https://mothur.org/wiki/miseq_sop/#assessing-error-rates