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rnammer (version 0.1)

Input sequence (fasta):

Genome sequence

Domain:

Which domain of Life does your sequence belong to.

Molecules:

Which rRNAs to detect.

Run in parallel?:

Runs all molecules and both strands in parallel. Require 6 threads.

What it does

Runs rnammer, a wrapper that makes use of hmmer to identify ribosomal RNA genes on full or draft genomes.

Citation

Lagesen K, Hallin PF, Roedland E, Staerfeldt HH, Rognes T, Ussery DW. RNammer: consistent annotation of rRNA genes in genomic sequences. Nucleic Acids Res. 2007 Apr 22.