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assemblystats (version 1.1.0)

Type of read:

Is this from an genomic (contig) or transcriptomic assembly (isotig) or are these raw reads (read)

Output histogram with bin sizes=1:

Use this to specify whether or not bin sizes of 1 should be used when plotting histograms

Source file in FASTA format:

Return all output files:

If checked, all output files will be displayed. If not checked, only the file 'Assembly Statistics' will be provided.

Summarise assembly overview

This script is used to give summary statistics of an assembly or set of reads. Typically this is run after an assembly to evaluate gross features.

# Gives back # - N50 # - num of contigs > 1 kb # - num of contigs # - Read or Contig Histogram and graphs. # - Summed contig length (by number of contigs, in sorted order)