KrakenTools is a suite of scripts to be used alongside the Kraken, KrakenUniq, Kraken 2, or Bracken programs. These scripts are designed to help Kraken users with downstream analysis of Kraken results. This program calculates the beta diversity (Bray-Curtis dissimilarity) from kraken, krona and bracken files.
Bracken files, Kraken and Kracken2 report files and Krona files. Additionally, you can pass any tab-separated file and specify the columns with the taxonomical information and read counts (--cols).
Beta diversity of the input files