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Kallisto pseudo (version 0.48.0+galaxy1)

Reference transcriptome for quantification:

Select a reference transcriptome:

If your transcriptome of interest is not listed, contact your Galaxy administrator

Single-end or paired reads:

Reads in FASTQ format:

Average fragment length:

Estimated standard deviation of fragment length:

kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.