Galaxy |

Replace column (version 0.2)

File in which you want to replace some values:

The entries of a specific column are replaced by the information given by the next input file.

Replace information file:

This file contains in the first column the entries that should be replaced by the values of the second column.

Which column should be replaced?:

Skip this many starting lines:

Delimited by:

When an unknown value is encountered:

Do not perform replacement on lines starting with:

What it does

This tool replaces the entries of a defined column with entries given by a replacement file. For example the replacement file holds the information of the naming scheme of ensembl annotated chromosomes in the frist column and in the second the UCSC annotation. A file which is having information about chromosomes in ensembl notation in column x can now be converted to a file which holds the same information but in UCSC annotation.

A useful repository for ensembl and UCSC chromosomes mapping is: https://github.com/dpryan79/ChromosomeMappings