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Gene length and GC content (version 0.1.2)

Select a built-in GTF file or one from your history:

Choose history if you don't see the correct GTF

Select a GTF file:

Select the GTF from a list of pre-installed files

Analysis to perform:

Select a built-in FASTA or one from your history:

Choose history if you don't see the correct FASTA. The FASTA must be the same genome version as the GTF.

Select a FASTA file:

Select the FASTA file from a list of pre-installed genomes

What it does

This tool calculates the length and/or GC content for the genes in a GTF file. For the GC content, it requires a FASTA file that is the same genome version as the GTF.

Inputs

a GTF file
a FASTA file (if GC content is requested)

Outputs

a tabular file with Gene ID and length
a tabular file with Gene ID and GC content

More Information

To calculate gene length, this tool counts the number of bases in all exons of a gene, after merging any overlapping exons from different transcripts.