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idba_ud (version 1.1.1 (Oct 18, 2012))

Fasta read file. Lower or equal to 250b (--read):

Fasta long read file. More than 250b (--long_read):

Fasta Paired-end reads for second level scaffolds (--read_level_2):

Fasta Paired-end reads for third level scaffolds (--read_level_3):

Fasta Paired-end reads for fourth level scaffolds (--read_level_4):

Fasta Paired-end reads for fifth level scaffolds (--read_level_5):

Minimum k value. Lower or equal to 124 (--mink):

Maximum k value. Lower or equal to 124 (--maxk):

Increment of k-mer of each iteration (--step):

Inner minimum k value (--inner_mink):

Inner increment of k-mer (--inner_step):

Prefix length used to build sub k-mer table (--prefix):

Minimum multiplicity for filtering k-mer when building the graph (--min_count):

Minimum supoort in each iteration (--min_support):

Number of threads (--num_threads):

Seed kmer size for alignment (--seed_kmer):

Minimum size of contig (--min_contig):

Similarity for alignment (--similar):

Max mismatch of error correction (--max_mismatch):

Minimum number of pairs (--min_pairs):

Other options: