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GotohScan (version 1.3.0)

Input Database:

Input Query:

Database is split into subsequences of size::

default: 10000

E-value:

Value should be < 10. default: 1e-3

Percent identity of aligned sequences:

Value should be in [0.0,100.00]

Print score distribution data for each query to a file:

Output Format:

GotohScan is a search tool that finds shorter sequences (usually genes) in large database sequences (chromosomes, genomes, ..) by computing all semi-global alignments. Thus, the query sequence is never truncated or split into subsequences, but always mapped to the database over its complete length. The alignment is computed via the Gotoh-alignment algorithm using affine gap costs.