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hicFindRestSite (version 3.7.2+galaxy0)
The organism genome fasta file to compute the restriction enzyme position.
Search pattern. For example, for HindIII this pattern is \"AAGCTT\". Both, forward and reverse strand are searched for a match. The pattern is a regexp and can contain regexp specif syntax (see For example the pattern CG..GC will find all occurrence of CG followed by any two bases and then GC.

Find restriction sites

This scripts find the locations of a given restriction enzyme sequence. This file can be used to build an Hi-C interaction matrix with restriction enzyme resolution by hicBuildMatrix.

For more information about HiCExplorer please consider our documentation on