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XCMS Differential Analsysis (version 0.0.4)

xset xcms data file:

E.g. output data file resulting from METAMS run

Class1 name:

Name of first class for the comparison

Class2 name:

Name of second class for the comparison

Number of items to return:

Top X differential items. E.g. if 10, it will return top 10 differential items.

Runs xcms diffreport for showing the most significant differences between two sets/classes of samples. This tool also creates extracted ion chromatograms (EICs) for the most significant differences. The figure below shows an example of such an EIC.

/repository/static/images/02534e21e01840b4/diffreport.png