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XCMS Get EICs (version 0.0.4)
E.g. output data file resulting from METAMS run
Start of Retention Time region to plot
End of Retention Time region to plot
Comma or line-separated list of m/z values for which to plot an EIC. One EIC will be plotted for each m/z given here.
Comma or line-separated list of sample names. Here you can specify the subset of samples to use for the EIC plots. NB: if your dataset has many samples, specifying a subset here can significantly speed up the processing time.
Combining samples means plot contains the combined EIC of a m/z in the different samples. When NOT combining, each plot only contains the EIC of the m/z in the respectively given sample (the sample name from the sample list in the same position as the m/z in the m/z list.). Tip: use Yes for visualizing EIC of grouped masses (MsClust or CAMERA groups), use No for visualizing EICs of the same mass in the different samples.
Select whether EIC should be on original or raw Retention Time

This tool will plot EICs for a given list of masses (or a mass window) using XCMS's getEIC method. It produces a HTML report showing the EIC plots, one for each given mass. The figure below shows an example of such an EIC plot.

/repository/static/images/02534e21e01840b4/massEIC.png