Galaxy | Tool Preview

Exonerate (version 2.4.0+galaxy2)

Select the query sequence(s) in fasta:

Reference sequence(s):

If your genome of interest is not listed, contact the Galaxy server administrators

Alignment method:

Output format:

Score threshold for gapped alignment:

Report alignment over a percentage of the maximum score attainable by each query:

Report best N results per query (0 to report all):

Minimum intron length limit:

This is not a hard limit - it only affects size of introns which are sought during heuristic alignment.

Maximum intron length limit:

This is not a hard limit - it only affects size of introns which are sought during heuristic alignment.

Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.