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PercolatorAdapter (version 3.1+galaxy0)

Run tool in batch mode for -in:

Input file(s):

select idxml,mzid data sets(s)

Run tool in batch mode for -in_decoy:

Input decoy file(s) in case of separate searches:

select idxml,mzid data sets(s)

Input file in OSW format:

select osw data sets(s)

Output file type -- default: determined from file extension or content:

Type of enzyme: no_enzyme,elastase,pepsin,proteinasek,thermolysin,chymotrypsin,lys-n,lys-c,arg-c,asp-n,glu-c,trypsin,trypsinp:

Calculate peptide-level FDRs instead of PSM-level FDRs:

Use the picked protein-level FDR to infer protein probabilities:

Use the -fasta option and -decoy_pattern to set the Fasta file and decoy pattern

OSW: the data level selected for scoring:

Type of the peptide main score:

Advanced Options

Advanced Options 0

Optional outputs:

Facilitate input to Percolator and reintegrate.