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Phylo.diversity (version
if between 0 and 100, the percentage of sequences to sample, if greater than one - report every n iterations
generated by count.seqs

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The phylo.diversity command calculates alpha diversity as the total of the unique branch length.

v.1.21.0: Updated to Mothur 1.33, added count parameter