Galaxy |

ENA Upload tool (version 0.9.0+galaxy0)

Action to execute:

test_submit:

Select the metadata input method:

Select the ENA sample checklist:

You can find metadata templates for each checklist at: https://github.com/ELIXIR-Belgium/ENA-metadata-templates

Select Excel (.xlsx) file based on template:

Select input data:

Add .fastq (.gz, .bz2) extension to the Galaxy dataset names to match the ones described in the input tables?:

Select dataset or dataset collection:

Names should match the compressed run's files names defined in the metadata

Submissions options

Submissions options 0

This is a wrapper for the ENA upload tool in https://github.com/usegalaxy-eu/ena-upload-cli. The input metadata can be submitted following the tabular format of the templates or their excel spreadsheet equivalent in https://github.com/ELIXIR-Belgium/ENA-metadata-templates. This template repo provides ready to use sheets for every ENA sample checklist and is automatically updated.

The ENA upload tool won't work unless you have provided an ENA Webin ID in User > Preferences > Manage Information > ENA Webin account details.