MLMM (GWAS analysis) (version 2.0.0)

Genotype matrix:

NxM, N = individuals in line, M = Markers in columns, Genotype coded in 0,1,2

SNP Information file:

3 columns: SNP, Chrom, Pos

Phenotype matrix:

NxT, N = individuals in line, T = Trait in columns (Phenot1, Phenot2...)

Maximum number of steps for the forward approach:

method:

MLMM version 1.0: Please cite "An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations.", Segura V, Vilhjalmsson BJ, Platt A, Korte A, Seren U, Long Q, Nordborg M., Nature Genetics, 44: 825-830, 2012.

Galaxy integration Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)

Support For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr

MLMM

Description

MLMM is an efficient multi-locus mixed-model approach for genome-wide association studies in structured populations.

For further informations, please visite the MLMM website.

Dependencies

MLMM: mlmm 1.0, Based on a archive provide by Vincent Segura: https://sites.google.com/site/vincentosegura/mlmm
Bioperl: perl-bioperl 1.6.924, Conda version