Note: You are currently using a version of Heinz based on IBM CPLEX Community version, which is limiting the capacity of Heinz in handling big networks. For an unlimited version of Heinz, you need to get a license of IBM CPLEX and compile Heinz from scratch from here https://github.com/ls-cwi/heinz. We are currently looking for an alternative to IBM CPLEX in Heinz to make an unlimited version of Heinz available to the public as soon as possible.
Score file --- the output file of the tool "Calculate Heinz scores": two columns delimited by a tab without headers, the first column is node identifier (e.g., genes, KEGG ORTHOLOGY (KO)); the second, Heinz score.
BRCA2 | -6.991782933819368 |
BRCA1 | -5.206139799106934 |
AACS | -0.9299868303078357 |
ABCC11 | -5.845009850430119 |
Edge file: the background network Heinz uses in the form of a list of edges; each line is made up of two node identifiers (e.g., genes, KEGG ORTHOLOGY (KO)) delimited by a tab. In practice, we could prepare this file using different pathway databases, such as Reactome, STRING and KEGG. Which database to choose depends on the question to solve.
ACTR1B | ACVR2B |
ZSWIM9 | FOXP3 |
LGALS4 | PRKX |
NPTX1 | CIAO1 |