Galaxy | Tool Preview

Generate summary statistics (version 1.0+galaxy0)
This tool generates summary statistics on FLOCK output.

Input

Any flowclr file, output from FLOCK or Cross Sample, containing fluorescence intensity value par marker and assigned population.

Output

This tool produces two reports. One indicates the population distribution in the input file, the other gives descriptive summary statistics per population and marker.


Example

Input - fluorescence intensities per marker per event:

Marker1 Marker2 Marker3 ... Population
33      47      11      ... 1
31      64      11      ... 6
21      62      99      ... 2
14      34      60      ... 7
...     ...     ...     ... ...

Output - Summary statistics:

Population .    Marker1 Marker2 ...
1          mean 188.7   71.7    ...
1          std  49.6    40.2    ...
1          min  107.0   0.0     ...
1          25%  149.0   40.0    ...
1          50%  183.0   77.0    ...
1          75%  222.0   105.0   ...
1          max  379.0   147.0   ...
2          mean 36.8    186.5   ...
2          std  40.6    50.5    ...
2          min  0.0     119.0   ...
2          25%  0.0     150.0   ...
2          50%  20.0    174.0   ...
2          75%  73.0    208.0   ...
2          max  124.0   433.0   ...
...        ...  ...     ...     ...

Output - Population report:

Population Count Percentage
1          3866  43.92
2          2772  31.50
3          2163  24.58
...        ...   ...
Total      8801