Galaxy | Tool Preview

seqtk_subseq (version 1.4+galaxy0)

What it does

Given a list of newline separated IDs from a fasta file, this will extract those named fasta sequences from the input file.

# Input ID list
seq1

# Input fasta
>seq1
ACGTMRWSYK
>seq2
RWSYKACGTM

results in

# Output result
>seq1
ACGTMRWSYK

Attribution

This Galaxy tool relies on the seqtk toolkit from lh3/seqtk, developed by Heng Li at the Broad Institute